In 1994, PTS-CAS received the government (CHED) permit to offer Bachelor of Arts in Theology (A.B. Th.) and Master of Divinity (M. Div.) programs. Permanent recognition was granted in 1996. Bachelor of Theology (B.Th.) and Master of Divinity (M.Div.) degree programs have been accredited by Asia Theological Association (ATA)in
1994. Philippine Association of Bible and Theological Schools (PABATS) have also accredited PTS since 1995.
PTS has become one of the seven member schools in the consortium of the Asia Graduate School of Theology
(AGST)–Philippines since 1996. In June 1999 the Commission on Higher Education (CHED) granted PTS-CAS permit to operate Bachelor of Science in Christian Education (B.S.C.E.), major in Early Childhood Education and
recognition was granted in 2002. In June 2006, permit has been granted to by CHED to operate Bachelor of
Elementary Education (BEED- major in Early Childhood Education and Content Courses) course and the full
recognition of the programs on April 2008.